omicverse.space.cellcharter¶

omicverse.space.cellcharter(adata, n_clusters, *, use_rep='X_pca', spatial_key='spatial', n_layers=3, aggregations='mean', out_key='X_cellcharter', cluster_key='cellcharter', connectivity_key='spatial_connectivities', distances_key='spatial_distances', sample_key=None, build_spatial_graph=True, delaunay=True, n_neighs=6, radius=None, trim_long_links=True, distance_percentile=99.0, random_state=1024, covariance_type='full', backend='auto', batch_size=None, trainer_params=None)[source]¶: Run a minimal CellCharter workflow on a spatial AnnData object.