Annotation

Tutorials for single-cell cell type annotation.

• Reference-free automated single-cell cell type annotation
• Reference automated single-cell cell type annotation
• Automatic cell type annotation with GPT/Other
• Mapping Cell Names to the Cell Ontology/Taxonomy
• Celltype auto annotation with SCSA
• Celltype auto annotation with MetaTiME
• Celltype annotation migration(mapping) with TOSICA
• Using scMulan to annotate cell types in Heart, Lung, Liver, Bone marrow, Blood, Brain, and Thymus
• 1. load h5ad
• 2. transform original h5ad with uniformed genes (42117 genes)
• 3. process uniformed data (simply norm and log1p)
• 4. load scMulan
• 5. visualization
• Consensus annotation with CellVote