omicverse.pp.tsne

omicverse.pp.tsne(adata, **kwargs)[source]

Compute t-SNE coordinates for cells.

Parameters:

  • adata (anndata.AnnData) – AnnData object with PCA representation available.

  • **kwargs – Backend-specific t-SNE parameters, such as perplexity, random_state and n_pcs.

Returns:

Stores embedding in adata.obsm['X_tsne'].

Return type:

None