Tutorials

The easiest way to get familiar with OmicVerse is to follow along with our tutorials. Most notebooks are designed to work in Google Colab with minimal setup.

• Bulk RNA-seq
  • Upstream
  • Preprocessing
  • Downstream
  • Deconvolution
  • Others
• Single-Cell RNA-seq
  • Alignment
  • Preprocessing
  • Annotation
  • Trajectory
  • Cell Structure
  • Velocity
  • Multi-omics
• Bulk-to-Single & Cross-Platform
  • Bulk RNA-seq generate ‘interrupted’ cells to interpolate scRNA-seq
  • Bulk RNA-seq to Single RNA-seq
  • Single RNA-seq to Spatial RNA-seq
• Spatial Transcriptomics
  • Preprocessing
  • Deconvolution
  • Downstream
• Foundation Models
  • Overview
  • Skill-Ready Models
  • Core Models
  • Specialized Models
  • Domain-Specific Models
• Visualization & Plotting
  • Visualization of single cell RNA-seq
  • Visualization of Bulk RNA-seq
  • Palette optimization for publication-quality single-cell & spatial plots
  • Scientific plotting for publication with OmicVerse
  • Color system