omicverse.io.read_h5ad

omicverse.io.read_h5ad(filename, **kwargs)

Read an .h5ad file.

Parameters:

• filename (str or pathlib.Path) – Path to the input .h5ad file.

• **kwargs – Additional keyword arguments forwarded to anndata.read_h5ad().

Returns:

Loaded AnnData object. 若文件由 read_visium_hd_seg() 生成，将自动从 obs['geometry'] 重建 GeoDataFrame 并写入 ``uns[‘spatial’][sample][‘geometries’]``（需安装 geopandas）。

Return type:

anndata.AnnData