omicverse.bulk.pyPPI¶

omicverse.bulk.pyPPI(gene: list, species: int, gene_type_dict: dict, gene_color_dict: dict, score: float = 0.4) → None[source]¶

Protein-protein interaction (PPI) analysis wrapper based on STRING.

Parameters:

gene (list) – Gene symbols used as seed nodes for building the interaction network.
species (int) – NCBI taxonomy id (e.g., 9606 for human).
gene_type_dict (dict) – Mapping from gene symbol to category/type used in node styling.
gene_color_dict (dict) – Mapping from gene symbol to display color.
score (float, default=0.4) – Minimum confidence score for retaining interactions.