omicverse.single.TrajInfer

omicverse.single.TrajInfer(adata: AnnData, basis: str = 'X_umap', use_rep: str = 'X_pca', n_comps: int = 50, n_neighbors: int = 15, groupby: str = 'clusters')

Trajectory inference class for single-cell data analysis.

This class provides methods for inferring developmental trajectories using various algorithms including Palantir, diffusion maps, and Slingshot.