omicverse.pl.cellproportion

omicverse.pl.cellproportion(adata, celltype_clusters, groupby, groupby_li=None, figsize=(4, 6), ticks_fontsize=12, labels_fontsize=12, ax=None, legend=False, legend_awargs=None, transpose=False, save=None, **kwargs)

Plot cell proportion of each cell type in each visual cluster.

Parameters:

• adata (AnnData) – AnnData object.

• celltype_clusters (str) – Cell type clusters.

• groupby (str) – Visual clusters.

• groupby_li (default: None) – Visual cluster list. (None)

• figsize (tuple (default: (4, 6))) – Figure size. ((4,6))

• ticks_fontsize (int (default: 12)) – Ticks fontsize. (12)

• labels_fontsize (int (default: 12)) – Labels fontsize. (12)

• ax (default: None) – Matplotlib axes object. (None)

• legend (bool (default: False)) – Whether to show legend. (False)

• legend_awargs (default: None) – Legend arguments. ({‘ncol’:1})

• transpose (bool (default: False)) – Whether to transpose the plot (horizontal bars). (False)

Returns:

None