omicverse.pl.optim_palette

omicverse.pl.optim_palette(adata, basis, colors, palette=None, **kwargs)[source]

Optimized palette for plotting

Parameters:

  • adata – AnnData object

  • basis – basis for plotting, which is the key of adata.obsm

  • colors – key of adata.obs for color

  • palette (default: None) – palette for plotting

  • kwargs – kwargs for spaco.colorize

Returns:

palette for plotting

Return type:

palette_spaco