omicverse.single.DEG

omicverse.single.DEG(adata: AnnData, condition: str, ctrl_group: str, test_group: str, method: str = 'wilcoxon', use_raw: bool = None)[source]

Differential gene-expression testing wrapper for single-cell datasets.

Parameters:

  • adata (AnnData) – Input single-cell AnnData.

  • condition (str) – Condition column in adata.obs.

  • ctrl_group (str) – Control-group label.

  • test_group (str) – Test-group label.

  • method (str, default='wilcoxon') – DEG method name.

  • use_raw (bool or None, default=None) – Whether to use adata.raw as expression matrix.