omicverse.single.pySIMBA¶

omicverse.single.pySIMBA(adata, workdir='simba_result') → None[source]¶

SIMBA wrapper for single-cell batch integration and graph-embedding construction.

Parameters:

adata (AnnData) – Input AnnData with batch labels in obs.
workdir (str, optional) – Directory used by SIMBA to store intermediate files and outputs.

Returns:

Initializes SIMBA runtime and stores input data/workspace.

Return type:

None

Examples

>>> simba_object = ov.single.pySIMBA(adata, workdir)