omicverse.pl.embedding_density

omicverse.pl.embedding_density(adata, basis, groupby, target_clusters, **kwargs)

Plot cluster-specific density on an existing embedding.

Parameters:

• adata (AnnData) – AnnData containing embedding coordinates and group labels.

• basis (str) – Embedding key (e.g., 'X_umap').

• groupby (str) – Observation column defining cluster labels.

• target_clusters (str or list) – Cluster label(s) to highlight in density map.

• **kwargs – Extra plotting arguments forwarded to embedding.

Returns:

Return value of embedding(...) with temporary density color.

Return type:

Any