omicverse.pl.bardotplot

omicverse.pl.bardotplot(adata, groupby, color, figsize=(8, 3), return_values=False, fontsize=12, xlabel='', ylabel='', xticks_rotation=90, ax=None, bar_kwargs=None, scatter_kwargs=None)[source]

Create a combined bar-and-dot summary plot by groups.

Parameters:

  • adata (AnnData) – AnnData containing expression/metadata used for plotting.

  • groupby (str) – Grouping column in adata.obs.

  • color (str) – Feature in adata.var_names or adata.obs to summarize.

  • figsize (tuple, default=(8, 3)) – Figure size.

  • return_values (bool, default=False) – Whether to return computed grouped values instead of plotting.

  • fontsize (int, default=12) – Font size.

  • xlabel (str, default='') – X-axis label.

  • ylabel (str, default='') – Y-axis label.

  • xticks_rotation (int, default=90) – Rotation angle of x tick labels.

  • ax (matplotlib.axes.Axes, optional) – Existing axis for plotting.

  • bar_kwargs (dict, optional) – Keyword arguments forwarded to plt.bar.

  • scatter_kwargs (dict, optional) – Keyword arguments forwarded to plt.scatter.

Returns:

Grouped values when return_values=True; otherwise plotting handles.

Return type:

pandas.DataFrame or tuple