omicverse.single.scanpy_cellanno_from_dict

omicverse.single.scanpy_cellanno_from_dict(adata, anno_dict, anno_name='major', clustertype='leiden')

Add cell type annotation from dict to anndata object.

Parameters:

• adata (anndata.AnnData) – AnnData object to which annotation labels are added.

• anno_dict (dict) – Mapping from cluster label to cell-type name.

• anno_name (str) – Prefix used to create output obs column {anno_name}_celltype.

• clustertype (str) – Cluster column in adata.obs used as mapping key.

Return type:

None