omicverse.pl.plot_embedding_celltype

omicverse.pl.plot_embedding_celltype(adata, figsize=(6, 4), basis='umap', celltype_key='major_celltype', title=None, celltype_range=(2, 9), embedding_range=(3, 10), xlim=-1000)

Create combined embedding plot with cell type legend and counts.

Parameters:

• adata (AnnData object)

• figsize (Figure size ((6,4)))

• basis (Embedding basis name ('umap'))

• celltype_key (Column name for cell types ('major_celltype'))

• title (Plot title (None))

• celltype_range (Grid range for cell type panel ((2,9)))

• embedding_range (Grid range for embedding panel ((3,10)))

• xlim (X-axis limit for counts (-1000))

Return type:

tuple

Returns:

Tuple of (figure, [embedding_axis, celltype_axis])