omicverse.bulk.string_interaction¶

omicverse.bulk.string_interaction(gene, species)[source]¶

Analyze protein-protein interaction network using STRING database.

Parameters:

gene (list) – List of gene names for PPI analysis.
species (int) – NCBI taxon identifiers (e.g. Human is 9606, see STRING organisms).

Returns:

DataFrame containing protein-protein interaction data with columns stringId_A, stringId_B, preferredName_A, preferredName_B, ncbiTaxonId, score, nscore, fscore, pscore, ascore, escore, dscore, tscore.

Return type:

res