omicverse.space.salvage_secondary_labels

omicverse.space.salvage_secondary_labels(adata, primary_label='labels_he', secondary_label='labels_gex', labels_key='labels_joint', **kwargs)

Merge primary and secondary segmentation labels.

Parameters:

• adata (AnnData) – Visium HD AnnData with multiple label layers.

• primary_label (str, default='labels_he') – Primary segmentation label key.

• secondary_label (str, default='labels_gex') – Secondary segmentation label key.

• labels_key (str, default='labels_joint') – Output merged-label key.

• **kwargs – Reserved keyword arguments.

Returns:

Updates merged labels in adata.

Return type:

None