omicverse.utils.biocontext.query_reactome

omicverse.utils.biocontext.query_reactome(identifier, species='Homo sapiens', include_disease=True)[source]

Query Reactome pathway database.

Parameters:
  • identifier (str) – Gene symbol, UniProt ID, or Reactome stable ID.

  • species (str) – Species name. Default 'Homo sapiens'.

  • include_disease (bool) – Include disease-related pathways.

Returns:

Reactome pathway analysis results.

Return type:

dict