omicverse.single.autoResolution¶

omicverse.single.autoResolution(adata, cpus=4)[source]¶

Automatically determine clustering resolution.

Parameters:

adata (anndata.AnnData) – Input single-cell AnnData for louvain resolution search.
cpus (int) – Number of worker processes used for subsampling evaluations.

Returns:

Updated AnnData, selected resolution, and silhouette-score table.

Return type:

Tuple[anndata.AnnData,float,pd.DataFrame]