omicverse.datasets.bhattacherjee

omicverse.datasets.bhattacherjee(processed=True)[source]

Processed single-cell data PFC adult mice under cocaine self-administration.

Adult mice were subject to cocaine self-administration, samples were collected at three time points: Maintenance, 48h after cocaine withdrawal and 15 days after cocaine withdrawal.

Parameters:

  • processed (bool) – Whether to return processed-style fallback mock data on failure.

  • References – Bhattacherjee A, Djekidel MN, Chen R, Chen W, Tuesta LM, Zhang Y. Cell type-specific transcriptional programs in mouse prefrontal cortex during adolescence and addiction. Nat Commun. 2019 Sep 13;10(1):4169. doi: 10.1038/s41467-019-12054-3. PMID: 31519873; PMCID: PMC6744514.

Return type:

AnnData

Returns:

  • AnnData – Single-cell RNA-seq dataset from Bhattacherjee et al. or mock fallback.

  • Examples – >>> import omicverse as ov >>> adata = ov.datasets.bhattacherjee() >>> print(adata)