omicverse.pl.ConvexHull

omicverse.pl.ConvexHull(adata, basis, cluster_key, hull_cluster, ax, color=None, alpha=0.2)[source]

Plot the ConvexHull for a cluster in embedding.

Parameters:

  • adata (AnnData) – AnnData object

  • basis (str) – str Embedding method in adata.obsm

  • cluster_key (str) – str Cluster key in adata.obs

  • hull_cluster (str) – str Cluster to plot for ConvexHull

  • ax – matplotlib.axes.Axes Axes object

  • color (default: None) – str, optional (default=None) Color for ConvexHull

  • alpha (float (default: 0.2)) – float, optional (default=0.2) Alpha for ConvexHull

Returns:

matplotlib.axes.Axes

Modified axes object

Return type:

ax