Tutorials¶

Contents¶

• Tutorial-Bulk:
  • Batch correction in Bulk RNA-seq or microarray data
  • Different expression analysis
  • Different expression analysis with DEseq2
  • Protein-Protein interaction (PPI) analysis by String-db
  • WGCNA (Weighted gene co-expression network analysis)
  • TCGA database preprocess
• Tutorial-Single:
  • Preprocessing the data of scRNA-seq
  • Celltype auto annotation with SCSA
  • Celltype auto annotation with MetaTiME
  • Celltype annotation migration(mapping) with TOSICA
  • Trajectory Inference with VIA
  • Trajectory Inference with VIA and scVelo
  • Pathway analysis with AUCell
  • Different expression analysis in scRNA-seq
  • Batch Correction with SIMBA
  • Drug response predict with scDrug
  • Cell interaction with CellPhoneDB
  • Multi omics analysis by MOFA
  • Multi omics analysis by MOFA and GLUE
• Tutorial-Bulk2Single:
  • Bulk RNA-seq generate 'interrupted' cells to interpolate scRNA-seq
  • Bulk RNA-seq to scRNA-seq
  • scRNA-seq to Spatial RNA-seq